error: package or namespace load failed for 'deseq2

[37] Formula_1.2-1 cluster_2.0.5 Matrix_1.2-8 The text was updated successfully, but these errors were encountered: Can you clarify how you updated your R to 4.0.1? [16] htmlwidgets_0.8 latticeExtra_0.6-28 knitr_1.15.1 now when I tried installing the missing packages they did install. Connect and share knowledge within a single location that is structured and easy to search. Convince your IT department to relax the permissions for R packages Installing Hmisc as suggested above did not solve the issue. locfit version 1.5-9.5 is in the repositories but depends on R (>= 4.1.0) I'm having a similar error, but different package: library("DESeq2") Then I reinstalled R then Rstudio then RTools. Looking for incompatible packages.This can take several minutes. [16] phyloseq1.30.0, loaded via a namespace (and not attached): Finally After 3-4 manual installations of missing packages everything worked. Warning message: + "htmlTable", "xfun" [5] Biobase2.46.0 GenomicRanges1.38.0 GenomeInfoDb1.22.1 IRanges2.20.2 March 1, 2023, 4:56pm Error: package or namespace load failed, object not found, How Intuit democratizes AI development across teams through reusability. I would recommend installing an older version of QIIME 2 for this plugin to work. + ), update = TRUE, ask = FALSE) I again tried installing with biocLite but was met with errors so I changed the CRAN mirror. sessionInfo() [9] S4Vectors0.24.4 BiocGenerics0.32.0, loaded via a namespace (and not attached): Please read the posting If you preorder a special airline meal (e.g. it would be good to hear any speculation you have of how this might have happened). [26] xtable1.8-4 scales1.1.1 backports1.1.9 checkmate2.0.0 BiocManager1.30.10 there is no package called Hmisc. Is the God of a monotheism necessarily omnipotent? Running under: macOS Sierra 10.12.6. I also tried something I found on google: but the installation had errors too, I can write them here if needed. Citation (from within R, enter citation ("DESeq2") ): Installation To install this package, start R (version "4.2") and enter: if (!require ("BiocManager", quietly = TRUE)) install.packages ("BiocManager") BiocManager::install ("DESeq2") For older versions of R, please refer to the appropriate Bioconductor release . "After the incident", I started to be more careful not to trip over things. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. and then updating the packages that command indicates. How can we prove that the supernatural or paranormal doesn't exist? Try installing zip, and then loading olsrr. [17] haven2.2.0 zlibbioc1.32.0 purrr0.3.3 scales1.1.0 * removing /Users/nikitavlasenko/miniconda3/envs/renv/lib/R/library/Hmisc [13] ggplot23.3.0 car3.0-7 carData3.0-3 Whats the grammar of "For those whose stories they are"? March 1, 2023, 3:25pm library ("DESeq2") Error: package or namespace load failed for 'DESeq2' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): there is no package called 'Hmisc' Installing Hmisc as suggested above did not solve the issue. I ran this code: Collecting package metadata (current_repodata.json): doneSolving environment: failed with initial frozen solve. Running under: Windows 10 x64 (build 18362), locale: there is no package called data.table Follow Up: struct sockaddr storage initialization by network format-string, Styling contours by colour and by line thickness in QGIS. Is a PhD visitor considered as a visiting scholar? [7] survival_2.40-1 foreign_0.8-67 BiocParallel_1.8.1 I am using the latest stable LAMMPS version (updated 17th Feb 2023) Also I am having troubles with the CMAKE unit testing, in particular for the force styles. Your best bet would be to download the package source code and change the R version and install manually if you wanted the most recent version of locfit to install on your computer. I tried again and again was met with missing packages BUT!!! 2. R version 3.6.1 (2019-07-05) Making statements based on opinion; back them up with references or personal experience. Update all/some/none? Press CTRL-C to abort. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. I'd take a look at need, to see if there are any insights to be had, so that you can correct the root problem rather than having to do this procedure with other packages. Looking for incompatible packages. [28] digest_0.6.12 stringi_1.1.2 grid_3.3.2 Why is this sentence from The Great Gatsby grammatical? In install.packages() : However, I am increasingly thinking it's something to do with how my IT has set permissions that are causing things to quietly fail. So if you still get this error try changing your CRAN mirror. Error: package or namespace load failed for DESeq2: objects rowSums, colSums, rowMeans, colMeans are not exported by 'namespace:S4Vectors'. [40] assertthat_0.1 rpart_4.1-10 nnet_7.3-12, It should not be necessary (R should take care of loading dependencies) but try installating data.table also. @Tung I've updated my R and RStudio versions (unfortunately I had to first convince my workplace to approve them) and installed the packages through R 3.5.1 however, I'm still getting the same rlang error. It could also be caused by a bad antivirus program that locks the dll which prevents it from being updated. data . I want to import DESeq2 in Rstudio though and it is giving me a different error when I try importing DESeq2: Error in library("DESeq2") : there is no package called DESeq2. I thought that working in a new environment would help, but it didnt. Error: package or namespace load failed for DESeq2 in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): Error: package or namespace load failed for DESeq2 in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): Making statements based on opinion; back them up with references or personal experience. [41] magrittr1.5 RCurl1.98-1.2 tibble3.0.3 Formula1.2-3 cluster2.1.0 But I guess you have many problems with your installation, and I'd suggest BiocManager::valid () rev2023.3.3.43278. package in your R session. "After the incident", I started to be more careful not to trip over things. What am I doing wrong here in the PlotLegends specification? Why do academics stay as adjuncts for years rather than move around? To learn more, see our tips on writing great answers. Error: package or namespace load failed for DESeq2 in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called locfit, Traffic: 307 users visited in the last hour, https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages, User Agreement and Privacy Copyright 2021 IRZU Intitut za raziskovanje zvonih umetnosti. Replacing broken pins/legs on a DIP IC package. to one of the following locations: https://code.bioconductor.org/browse/DESeq2/, https://bioconductor.org/packages/DESeq2/, git clone https://git.bioconductor.org/packages/DESeq2, git clone git@git.bioconductor.org:packages/DESeq2. [10] RColorBrewer_1.1-2 plyr_1.8.4 stringr_1.2.0 ): RRlib ( R ) libiconv.so LD_LIBRARY_PATH R Sys.getenv("LD_LIBRARY_PATH") R RR I even tried BiocManager::install("XML") but all failed as shown below. [65] ape5.3 stringi1.4.6 Rcpp1.0.4 vctrs0.2.4 Error: package or namespace load failed for GenomeInfoDb in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): enter citation("DESeq2")): To install this package, start R (version I then launched the R application (from the finder, not RStudio) and installed BiocManager. library(DESeq2) Solution To resolve this error, install the required package as a cluster-installed library. CRAN: https://mirrors.sjtug.sjtu.edu.cn/cran/, Bioconductor version 3.12 (BiocManager 1.30.17), R 4.0.3 (2020-10-10), Old packages: 'cli', 'dplyr', 'igraph', 'MASS', 'ps', 'RSQLite', 'testthat', 'tibble', package locift is not available for Bioconductor version '3.12', A version of this package for your version of R might be available elsewhere,see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages. now when I tried installing the missing packages manually (with install.packages("missingPackage")) they did install correctly. [22] scales_0.4.1 backports_1.0.5 checkmate_1.8.2 By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. [19] htmlTable_1.9 Rcpp_0.12.9 acepack_1.4.1 "4.2") and enter: For older versions of R, please refer to the appropriate The package has place the R version constraint. Did any DOS compatibility layers exist for any UNIX-like systems before DOS started to become outmoded? Is a PhD visitor considered as a visiting scholar? I do know that it works well in qiime2-2020.6. failed UnsatisfiableError: The following specifications were found to be incompatible with the existing python installation in your environment: Specifications: q2-aldex2 -> python=3.6 Your python: python=3.8.15 Asking for help, clarification, or responding to other answers. Citation (from within R, This is the same answer I wrote in a comment to Hack-R I just wanted to post a separate answer: What I did was - uninstalled everything (RTools then RStudio thenR and also I deleted the R directory because it still had all the previous libraries) I did this in order to eliminate any chance that something was corrupt. Does anyone know why I'm getting the following message when I load tidyverse in a new session. requires R 4 and running more than a couple of releases behind in R risks multiplying problems. [5] BiocManager1.30.10 GenomeInfoDbData1.2.2 cellranger1.1.0 pillar1.4.3 9543 Abort trap: 6 | R_DEFAULT_PACKAGES= LC_COLLATE=C "${R_HOME}/bin/R" $myArgs --no-echo --args ${args}, The downloaded source packages are in Im trying to use this code: install.packages("locfit"), but this warning appeared: package locfit is not available for this version of R dlopen(/Users/nikitavlasenko/miniconda3/envs/renv/lib/R/library/cluster/libs/cluster.so, 6): Symbol not found: _libintl_dgettext Installing package(s) 'GenomeInfoDbData' Is there a proper earth ground point in this switch box? If you have a query related to it or one of the replies, start a new topic and refer back with a link. When you load the package, you can observe this error. 9. Working with my work IT department we have now tied this to custom permissions on my workstation that mean that R packages can only be run to pre-specified libraries (in my case "C:\R\R-3.4.3\library"). [34] lazyeval_0.2.0 RCurl_1.95-4.8 tibble_1.2 If not, I recommend using the latest version of R and Bioconductor for bug fixes and improvements. Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05) I tried to get a whole new environment and install an old version of Qiime but I still got a ton of conflicts and it didnt install. Sign in [45] Biostrings2.54.0 ade41.7-15 compiler3.6.3 rlang0.4.5 4. March 1, 2023, 8:52pm Use of this site constitutes acceptance of our User Agreement and Privacy Why are physically impossible and logically impossible concepts considered separate in terms of probability? Old packages: 'RcppArmadillo', 'survival' install.packages ("backport") You will be offered a choice to install v 1.1,10 from source. Asking for help, clarification, or responding to other answers. Follow Up: struct sockaddr storage initialization by network format-string. RcppArmadillo 0.9.880.1.0 0.9.900.1.0 TRUE Just to add on -- do you require an old version of Bioconductor for your current project? Thanks for contributing an answer to Bioinformatics Stack Exchange! Platform: x86_64-w64-mingw32/x64 (64-bit) error: object 'rlang_dots_list' not found Running under: macOS Sierra 10.12.3, locale: You are doing something very wrong when installing your packages. Whats the grammar of "For those whose stories they are"? R version 4.0.1 (2020-06-06) Installing DESeq2 Error: no package called GenomeInfoDbData, https://bioconductor.org/packages/3.11/data/annotation/src/contrib/GenomeInfoDbData_1.2.3.tar.gz, https://cran.rstudio.com/bin/macosx/contrib/4.0/RcppArmadillo_0.9.880.1.0.tgz, https://cran.rstudio.com/bin/macosx/contrib/4.0/survival_3.1-12.tgz. 0 packages out-of-date; 2 packages too new, BiocManager::install(c( Already on GitHub? I would argue that the conclusion to, Yeah, just need to select one way of doing it and never use the other. BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib I am also encountering a set of similar (although possible totally unrelated) issue with other packages, RStudio provides the following warning every startup, library(devtools) gives the following errors, Someone on twitter asked for the results of packageDescription("rlang"). If you dont post the error in question (why you cant install Hmisc) no one can help answer your question. So, supposedly the issue is with Hmisc. It fails with the VORO++ library, It seems it is related to the -Xcompiler flag. library(caret) namespace load failed Object sigma not found caret , . Stack Exchange network consists of 181 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. Platform: x86_64-apple-darwin15.6.0 (64-bit) Please try reinstalling rlang on a fresh session. [36] digest0.6.25 stringi1.4.6 grid3.6.1 tools3.6.1 bitops1.0-6 nnet, spatial, survival Not the answer you're looking for? New replies are no longer allowed. Warning: cannot remove prior installation of package xfun [7] GenomicRanges1.38.0 GenomeInfoDb1.22.0 IRanges2.20.2 Use MathJax to format equations. Using indicator constraint with two variables, Does there exist a square root of Euler-Lagrange equations of a field? /private/var/folders/0t/8jm6lgqs0qj63rprpf9q_nfw0000gn/T/RtmpMNoZz3/downloaded_packages Thanks for contributing an answer to Stack Overflow! Error in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]) : there is no package called 'data.table' Error: package or namespace load failed for 'DESeq2' Tried installing the missing package: Is there anything I can do to speed it up? [51] rstudioapi0.11 R62.4.1 rpart4.1-15 nnet7.3-14 compiler_3.6.1, BiocManager::install(c( C:\R\R-3.4.3\library). [9] Biobase_2.34.0 BiocGenerics_0.20.0, loaded via a namespace (and not attached): Thanks for your suggestion. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Also note, however, that the error you got has been associated in the past with mirror outages. rev2023.3.3.43278. The issue here was likely that you used two different package managers (conda and R), each setting and managing their own paths. (Factorization). The error states that the current version is 0.4.5 but 0.4.10 is required. Installing package(s) 'htmlTable', 'xfun' When you load the package, you can observe this error. in /Users/nikitavlasenko/miniconda3/envs/renv/lib/R/library/cluster/libs/cluster.so binary source needs_compilation Have you tried install.packages("locfit") ? @artembus Sounds like it was a ton of work! [21] openxlsx4.1.4 rio0.5.16 tibble2.1.3 mgcv1.8-31 Well occasionally send you account related emails. [61] curl4.3 R62.4.1 dplyr0.8.5 permute0.9-5 Should I update the Bioconductor to latest version instead? I hope you can see something I can't see and help me solving this issue. Disconnect between goals and daily tasksIs it me, or the industry? This is default text for notification bar, Removing Unwanted Variation Using Pseudoreplicates and Pseudosamples, Identifying Differentially Abundant Phosphoproteome Sites With ProteomeRiver, Extension of scPipe Bioconductor Package for scATAC-seq Data, Matilda for Single-cell Multi-omics Data Integration, cellXY for Exploring Gender-specific Genes in Single Cell RNA-seq Data, Stereopy as an Advanced Tool for Interpreting Spatial Transcriptomics Data, Spectre Toolkit for Rapid Analysis of Cytometry Data, A Bioconductor Framework for High-dimensional in situ Cytometry Analysis, Error when installing Aldex2 Community Plugin Support, How the Gut Microbiota Affects COVID-19 Vaccine Immunogenicity , Clinical Application of 24 G Cannula Needle and 3-0 Polypropylene Suture in Vas Deferens Exploration. Traffic: 307 users visited in the last hour, https://cran.rstudio.com/src/contrib/htmlTable_2.1.0.tar.gz', https://wbc.upm.edu.my/cran/src/contrib/PACKAGES'. Sorry if I missed this, the question was quite long so I kind of skimmed, but I noticed that early on some of the packages were reported as requiring manual compilation from source. Running install.packages("Hmisc") gives the first part of the error with missing cluster.so library. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. [7] edgeR_3.16.5 limma_3.30.12 [37] data.table1.12.8 hms0.5.3 lifecycle0.2.0 stringr1.4.0 [4] LCNUMERIC=C LCTIME=English_Malaysia.1252, attached base packages: Open Source Biology & Genetics Interest Group. Is there a single-word adjective for "having exceptionally strong moral principles"? "htmlTable", "xfun" [25] farver2.0.3 withr2.1.2 survival3.1-11 magrittr1.5 [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8, attached base packages: Raise a support ticket every time you need to install a package into a custom location and hope that IT eventually gives in. Error: package or namespace load failed for 'DESeq2' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): 'KEGGREST' 2301_76497647 17 1 109+ 20+ 30 10 1 0 2 0 Does a summoned creature play immediately after being summoned by a ready action? Join us at CRISPR workshops in Koper, Slovenia in 2023. Glad everything is finally working now. Error: package or namespace load failed for 'DESeq2': objects 'rowSums', 'colSums', 'rowMeans', 'colMeans' are not exported by 'namespace:S4Vectors' I am using R 3.6.1 and Rstudio 1.2. technocrat August 27, 2020, 10:15pm #2 RedRabbit: DESeq2 requires R 4 and running more than a couple of releases behind in R risks multiplying problems. Installation instructions to use this guide. to your account. check that immediate dependencies are installed, but not that the dependencies of those, etc are installed. a, There are binary versions available but the source versions are later: Hey, I tried your suggestion and it didn't work as it is but I did figure it out probably with the help of your suggestion. Erasmus+ funds available! Choose Yes. [9] lattice0.20-40 glue1.3.2 digest0.6.25 XVector0.26.0 You signed in with another tab or window. What I did was - uninstalled everything (R, Rstudio, RTools and deleted the R directory) to eliminate any chance that something was corrupt. Bioconductor release. Just updated my previous R to 4.01 and now I cant load DESeq2. Error: package or namespace load failed for DESeq2, R version 3.3.2 (2016-10-31) Policy. [31] tools_3.3.2 bitops_1.0-6 magrittr_1.5 problem copying C:\Users\ASUS\Documents\R\win-library\3.6\00LOCK\xfun\libs\x64\xfun.dll to C:\Users\ASUS\Documents\R\win-library\3.6\xfun\libs\x64\xfun.dll: Permission denied, BiocManager::install("XML") [Note I have now updated to 3.5.1 and 1.1.453 and am still experiencing the issues below with the exception of the "built under R version 3.5.1" warning messages], I have installed the rlang package using install.packages("rlang") without encountering any issues but when I attempt to load the package I get the following error, Error: package or namespace load failed for rlang: I highly recommend that any R/RStudio version not installed inside conda be removed. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, You can try installing packages in R (which comes with R 3.5.1, not RStudio). rev2023.3.3.43278. [5] IRanges_2.8.1 S4Vectors_0.12.1 What do I need to do to reproduce your problem? What can a lawyer do if the client wants him to be acquitted of everything despite serious evidence? Platform: x86_64-apple-darwin17.0 (64-bit) I have been working on installing Aldex2 (@dgiguer) in my Qiime environment using Ubuntu. trying URL 'https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/XML_3.99-0.3.zip' Error: package or namespace load failed for ' tidyverse' in dyn.load (file, DLLpath = DLLpath, . so I would try to use BiocManager::install("XML"). Does ZnSO4 + H2 at high pressure reverses to Zn + H2SO4? https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6: https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/PACKAGES', https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/htmlTable_2.0.1.zip', https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/xfun_0.16.zip', https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/XML_3.99-0.3.zip', User Agreement and Privacy Installation path not writeable, unable to update packages: boot, class, KernSmooth, lattice, MASS, Matrix, mgcv, nlme, package xfun successfully unpacked and MD5 sums checked [4] BiocParallel1.20.1 matrixStats0.56.0 Biobase2.46.0 I tried to install Python 3.6 and got 1000s of lines of conflicts, and python version still returns 3.8. when I switch back to my Qiime environment to install Aldex2, I get an error. Powered by Discourse, best viewed with JavaScript enabled, DESeq2: Error: package or namespace load failed for DESeq2: objects rowSums, colSums, rowMeans, colMeans are not exported by 'namespace:S4Vectors'. The most common cause of this problem is trying to update a package while it is loaded in R (possibly in another process!). Thnaks anyway, Can't Load R DESeq2 Library, Installed All Missing Packages and Still Have Problems, How Intuit democratizes AI development across teams through reusability. Expected in: /usr/lib/libSystem.B.dylib, dyld: Symbol not found: _utimensat [46] crayon1.3.4 pkgconfig2.0.3 ellipsis0.3.1 Matrix1.2-18 data.table1.13.0 C:\Users\ASUS\AppData\Local\Temp\RtmpCiM0wL\downloaded_packages running multiple versions of the same package, keeping separate libraries for some projects). if (!require("BiocManager", quietly = TRUE)) This sort of problems almost always comes from a bug in R on Windows: If you reinstall a package that includes compiled code, and if that package is already loaded in R, the DLL will not get updated. [6] htmltools0.5.0 base64enc0.1-3 survival3.2-3 rlang0.4.7 pillar1.4.6 I've previously written a blog post about this topic, and I can say from experience that installing R packages through conda can cause lots of headaches. Then I tried running few commands and I hope the information from them will help finding the cause of all the errors: Is there anyone the same as mine error while loading library(DESeq2)? I tried following the instructions for 2019.7 as well and I am getting the same error. Connect and share knowledge within a single location that is structured and easy to search. Loading required package: GenomeInfoDb I can download DESeq2 using, User Agreement and Privacy Styling contours by colour and by line thickness in QGIS. * removing /Users/nikitavlasenko/miniconda3/envs/renv/lib/R/library/DESeq2. [1] RCurl1.98-1.1 SummarizedExperiment1.16.1 DelayedArray0.12.2 May I know is there any other approach I can try? To learn more, see our tips on writing great answers. I tried the installation with biocLite again and was met with missing packages again (or the installation was ok and the when I tried loading the DESeq2 library I was met with missing packages errors, I don't remember) BUT!!! 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details, replacement repositories: ERROR: dependency Hmisc is not available for package DESeq2 Assuming that your conda environment name is renv, try running this in the terminal: This should open up the Rstudio interface, like normal, but using everything defined in your renv environment. [33] forcats0.5.0 foreign0.8-76 vegan2.5-6 tools3.6.3 Feedback When I try installing GenomeInfoDbData and GenomeInfoDb using conda, it says that the packages were already installed. R version 3.6.3 (2020-02-29) I tried to download the "locfit" package but I can't find it anywhere. Idk, but the issue came up from using installations from within R/Rstudio, and maybe it will never happen if we use just, @NikitaVlasenko you should be able to point Rstudio to the, We've added a "Necessary cookies only" option to the cookie consent popup, DESeqDataSetFromTximport invalid rownames length, deseq2 model design : Different gene output, deseq2 single factor design output interpretation. As others have mentioned, this is likely an issue with having multiple versions of R or RStudio installed. How to notate a grace note at the start of a bar with lilypond? Bad: conda install -c bioconda bioconductor-deseq2. biocLite(), install.packages() (and the devtools equivalent?) .onLoad failed in loadNamespace() for 'rlang', details: install.packages('', repo='http://nbcgib.uesc.br/mirrors/cran/'). When an R package depends on a newer package version, the required package is downloaded but not loaded. Expected in: /Users/nikitavlasenko/miniconda3/envs/renv/lib/R/lib/libR.dylib Are there tables of wastage rates for different fruit and veg? But I guess you have many problems with your installation, and I'd suggest. Connect and share knowledge within a single location that is structured and easy to search. Sounds like you might have an issue with which R Rstudio is running. After 3-4 manual installs everything worked. [25] XVector_0.14.0 gridExtra_2.2.1 ggplot2_2.2.1 If not fixed, Try removing remove.packages (rlang) then. In file.copy(savedcopy, lib, recursive = TRUE) : I just figured Id ask. Error: package or namespace load failed for 'DESeq2' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): there is no package called 'locfit' 0 cbravo11 0 @e0025e70 Last seen 10 months ago United States I installed DESeq2 using this code: To learn more, see our tips on writing great answers. It only takes a minute to sign up. downloaded 4.1 MB, package XML successfully unpacked and MD5 sums checked, The downloaded binary packages are in I think the latest version of QIIME 2 that can run this plugin is qiime2-2021.2. Policy. Referenced from: /Users/nikitavlasenko/miniconda3/envs/renv/lib/R/library/cluster/libs/cluster.so As mentioned above, my institutional IT can replicate this on a laptop with a completely fresh R install and no prior package installations (meaning isn't to do with installing with another version of the package already running). [21] htmlwidgets1.5.1 latticeExtra0.6-29 knitr1.29 htmlTable2.1.0 Rcpp1.0.5 vegan) just to try it, does this inconvenience the caterers and staff?